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LOC17881397 transcription factor HY5 [ Capsella rubella ]

Gene ID: 17881397, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17881397
Gene description
transcription factor HY5
Locus tag
CARUB_v10003520mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17881397 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238918.1 (3550259..3551946, complement)

NW_006238918.1Genomic Context describing neighboring genes Neighboring gene probable sugar phosphate/phosphate translocator At5g11230 Neighboring gene WD repeat-containing protein 43 Neighboring gene disease resistance protein TAO1 Neighboring gene protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 Neighboring gene uncharacterized LOC17883005

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238918 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in red or far-red light signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to far red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HY5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238918.1 Reference Caprub1_0

    Range
    3550259..3551946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006289842.2 → XP_006289904.2  transcription factor HY5

    UniProtKB/TrEMBL
    R0FK19
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases