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LOC17880376 protein FAR1-RELATED SEQUENCE 5 [ Capsella rubella ]

Gene ID: 17880376, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17880376
Gene description
protein FAR1-RELATED SEQUENCE 5
Locus tag
CARUB_v10007256mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17880376 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (20717..23914, complement)

NW_006238917.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g38150 Neighboring gene transcription termination factor MTERF6, chloroplastic/mitochondrial Neighboring gene protein FAR1-RELATED SEQUENCE 9 Neighboring gene cellulose synthase-like protein D4 Neighboring gene uncharacterized LOC111829249

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238917 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAR1-RELATED SEQUENCE 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238917.1 Reference Caprub1_0

    Range
    20717..23914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006285720.2 → XP_006285782.1  protein FAR1-RELATED SEQUENCE 5

    See identical proteins and their annotated locations for XP_006285782.1

    UniProtKB/TrEMBL
    R0H1Z6
    Conserved Domains (5) summary
    smart00575
    Location:591 → 615
    ZnF_PMZ; plant mutator transposase zinc finger
    PLN03097
    Location:10 → 742
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam03101
    Location:86 → 177
    FAR1; FAR1 DNA-binding domain
    pfam07106
    Location:716 → 792
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam10551
    Location:302 → 392
    MULE; MULE transposase domain
Nucleotide Protein
Heading Accession and Version

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