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LOC17879897 zinc-finger homeodomain protein 2 [ Capsella rubella ]

Gene ID: 17879897, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17879897
Gene description
zinc-finger homeodomain protein 2
Locus tag
CARUB_v10007856mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17879897 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (6090589..6091633)

NW_006238917.1Genomic Context describing neighboring genes Neighboring gene protein MODIFIER OF SNC1 1 Neighboring gene tryptophan aminotransferase-related protein 2 Neighboring gene adenylate isopentenyltransferase 4 Neighboring gene pectinesterase inhibitor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238917 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc-finger homeodomain protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238917.1 Reference Caprub1_0

    Range
    6090589..6091633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006286217.2 → XP_006286279.1  zinc-finger homeodomain protein 2

    See identical proteins and their annotated locations for XP_006286279.1

    UniProtKB/TrEMBL
    R0FAW7
    Conserved Domains (2) summary
    TIGR01565
    Location:162 → 217
    homeo_ZF_HD; homeobox domain, ZF-HD class
    pfam04770
    Location:48 → 100
    ZF-HD_dimer; ZF-HD protein dimerization region
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases