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LOC17878835 putative transcription factor bHLH086 [ Capsella rubella ]

Gene ID: 17878835, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17878835
Gene description
putative transcription factor bHLH086
Locus tag
CARUB_v10007389mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17878835 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (14965421..14966612)

NW_006238917.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene putative aquaporin NIP4-1 Neighboring gene probable aquaporin NIP4-2 Neighboring gene 5-oxoprolinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238917 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: putative transcription factor bHLH086

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238917.1 Reference Caprub1_0

    Range
    14965421..14966612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023779822.1 → XP_023635590.1  LOW QUALITY PROTEIN: putative transcription factor bHLH086

Nucleotide Protein
Heading Accession and Version

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