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LOC17878794 agamous-like MADS-box protein AGL80 [ Capsella rubella ]

Gene ID: 17878794, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17878794
Gene description
agamous-like MADS-box protein AGL80
Locus tag
CARUB_v10006189mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (11457924..11460097)

NW_006238917.1Genomic Context describing neighboring genes Neighboring gene putative pectate lyase 14 Neighboring gene uncharacterized protein At4g13200, chloroplastic Neighboring gene uncharacterized LOC111829527 Neighboring gene CLAVATA3/ESR (CLE)-related protein 44 Neighboring gene probable serine/threonine-protein kinase PBL24

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238917 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL80

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238917.1 Reference Caprub1_0

    Range
    11457924..11460097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006284835.2 → XP_006284897.2  agamous-like MADS-box protein AGL80

    UniProtKB/TrEMBL
    R0GZP3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases