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LOC17875884 transcription factor TGA1 [ Capsella rubella ]

Gene ID: 17875884, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17875884
Gene description
transcription factor TGA1
Locus tag
CARUB_v10026623mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17875884 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238916.1 (12395170..12398573)

NW_006238916.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17876311 Neighboring gene uncharacterized LOC111829082 Neighboring gene 50S ribosomal protein L29, chloroplastic Neighboring gene myb-related protein 308

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238916 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238916.1 Reference Caprub1_0

    Range
    12395170..12398573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006280602.2 → XP_006280664.1  transcription factor TGA1

    See identical proteins and their annotated locations for XP_006280664.1

    UniProtKB/TrEMBL
    R0EWJ4
    Conserved Domains (2) summary
    cd14708
    Location:84 → 135
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:170 → 246
    DOG1; Seed dormancy control
Nucleotide Protein
Heading Accession and Version

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