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sumv-1 Protein sumv-1 [ Caenorhabditis elegans ]

Gene ID: 175720, updated on 2-Nov-2024

Summary

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Official Symbol
sumv-1
Official Full Name
Protein sumv-1
Primary source
WormBase:WBGene00016409
Locus tag
CELE_C34E10.8
See related
AllianceGenome:WB:WBGene00016409
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in cytoplasm; neuron projection; and nucleus. Is expressed in hypodermis; intestine; and neurons. Orthologous to human INO80D (INO80 complex subunit D). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sumv-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
19
Sequence:
Chromosome: III; NC_003281.10 (5249075..5254187, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Peroxisome biogenesis factor 10;Tryptophan--tRNA ligase, mitochondrial Neighboring gene Neurogenic differentiation factor 1 Neighboring gene Protein CLEC16A homolog Neighboring gene GPN-loop GTPase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence of a MOF histone acetyltransferase-containing NSL complex in C. elegans. Hoe M, et al. Worm, 2014 Oct-Dec. PMID 26430553, Free PMC Article
  2. SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans. Yücel D, et al. Dev Biol, 2014 Aug 15. PMID 24882710
  3. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. Cui M, et al. PLoS Genet, 2006 May. PMID 16710447, Free PMC Article
  4. ITSN-1 controls vesicle recycling at the neuromuscular junction and functions in parallel with DAB-1. Wang W, et al. Traffic, 2008 May. PMID 18298590, Free PMC Article
  5. Protein interaction mapping in C. elegans using proteins involved in vulval development. Walhout AJ, et al. Science, 2000 Jan 7. PMID 10615043

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
  
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in neuron projection IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein sumv-1
NP_498116.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5249075..5254187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065715.5 → NP_498116.2  Protein sumv-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498116.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P46582
    Conserved Domains (2) summary
    pfam13891
    Location:253 → 302
    zf-C3Hc3H; Potential DNA-binding domain
    pfam14181
    Location:779 → 921
    YqfQ; YqfQ-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P46582.2

Gene LinkOut

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