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FER1L6-AS2 FER1L6 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 157376, updated on 17-Sep-2024

Summary

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Official Symbol
FER1L6-AS2provided by HGNC
Official Full Name
FER1L6 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:26534
See related
Ensembl:ENSG00000253868 AllianceGenome:HGNC:26534
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C8orf78
Expression
Biased expression in stomach (RPKM 3.2), testis (RPKM 2.8) and 6 other tissues See more
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Genomic context

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See FER1L6-AS2 in Genome Data Viewer
Location:
8q24.13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (124046071..124171522, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (125178461..125303975, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (125058312..125183763, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902014 Neighboring gene fer-1 like family member 6 Neighboring gene Sharpr-MPRA regulatory region 15371 Neighboring gene FER1L6 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 12119 Neighboring gene neuropilin and tolloid like 2 pseudogene Neighboring gene ARF GTPase 1 pseudogene 3 Neighboring gene uncharacterized LOC101927588 Neighboring gene uncharacterized LOC124902015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19507 Neighboring gene Sharpr-MPRA regulatory region 14070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27879 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27880 Neighboring gene RNA, U6 small nuclear 756, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • FER1L6 antisense RNA 2 (non-protein coding)

Clone Names

  • FLJ32770, MGC126551, MGC126555

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103547.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC100871, AI425048, AK057332
    Related
    ENST00000520031.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    124046071..124171522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    125178461..125303975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182525.1: Suppressed sequence

    Description
    NM_182525.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

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