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Gml2 glycosylphosphatidylinositol anchored molecule like 2 [ Mus musculus (house mouse) ]

Gene ID: 15202, updated on 2-Nov-2024

Summary

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Official Symbol
Gml2provided by MGI
Official Full Name
glycosylphosphatidylinositol anchored molecule like 2provided by MGI
Primary source
MGI:MGI:1341831
See related
Ensembl:ENSMUSG00000068600 AllianceGenome:MGI:1341831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
HemT; Hemt1; 1700057K19Rik
Summary
Orthologous to human GML (glycosylphosphatidylinositol anchored molecule like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 31.5) See more
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Genomic context

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See Gml2 in Genome Data Viewer
Location:
15 D3; 15 34.28 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (74690791..74717997)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (74818941..74846148)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33174 Neighboring gene lymphocyte antigen 6 family member K Neighboring gene STARR-seq mESC enhancer starr_38997 Neighboring gene glycosylphosphatidylinositol anchored molecule like Neighboring gene cytochrome P450, family 11, subfamily b, polypeptide 1 Neighboring gene Cyp11b2 promoter Neighboring gene cytochrome P450, family 11, subfamily b, polypeptide 2 Neighboring gene predicted gene, 41347 Neighboring gene STARR-seq mESC enhancer starr_38998 Neighboring gene lymphocyte antigen 6 family member M

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A novel mouse gene, HemT, encoding an hematopoietic cell-specific transcript. Xue H, et al. Gene, 1999 Apr 29. PMID 10231568
  2. Organization, evolution and functions of the human and mouse Ly6/uPAR family genes. Loughner CL, et al. Hum Genomics, 2016 Apr 21. PMID 27098205, Free PMC Article
  3. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
hematopoietic cell transcript 1
Names
hematopoietic cell-specific transcript

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010416.2 → NP_034546.2  hematopoietic cell transcript 1 precursor

    See identical proteins and their annotated locations for NP_034546.2

    Status: VALIDATED

    Source sequence(s)
    AK005659, AK005823, AK006826
    Consensus CDS
    CCDS27534.1
    UniProtKB/TrEMBL
    G5E8L7, Q9DAP4
    Related
    ENSMUSP00000094130.2, ENSMUST00000096399.8
    Conserved Domains (1) summary
    cd00117
    Location:47 → 131
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    74690791..74717997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006520453.3 → XP_006520516.1  hematopoietic cell transcript 1 isoform X2

    See identical proteins and their annotated locations for XP_006520516.1

    UniProtKB/TrEMBL
    G5E8L7, Q9DAP4
    Conserved Domains (1) summary
    cd00117
    Location:47 → 131
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  2. XM_006520452.3 → XP_006520515.1  hematopoietic cell transcript 1 isoform X1

    UniProtKB/TrEMBL
    Q9DAP4
    Conserved Domains (1) summary
    cd00117
    Location:81 → 165
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  3. XM_006520454.3 → XP_006520517.1  hematopoietic cell transcript 1 isoform X2

    See identical proteins and their annotated locations for XP_006520517.1

    UniProtKB/TrEMBL
    G5E8L7, Q9DAP4
    Conserved Domains (1) summary
    cd00117
    Location:47 → 131
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

RNA

  1. XR_003951355.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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