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C19L hypothetical protein [ Variola virus ]

Gene ID: 1486575, updated on 21-Jun-2023

Summary

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Gene symbol
C19L
Gene description
hypothetical protein
Locus tag
VARVgp039
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Variola virus (strain: India-1967, ssp. major, isolate: Ind3)
Lineage
Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Orthopoxvirus
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Genomic context

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Sequence:
NC_001611.1 (33321..33806, complement)

NC_001611.1Genomic Context describing neighboring genes Neighboring gene palmytilated EEV membrane glycoprotein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DNA-binding virion core protein Neighboring gene poly(A) polymerase large subunit Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001611.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the nucleotide sequence of 23.8 kbp from the left terminus of the genome of variola major virus strain India-1967. Shchelkunov SN, et al. Virus Res, 1996 Feb. PMID 8725113
  2. Genes of variola and vaccinia viruses necessary to overcome the host protective mechanisms. Shchelkunov SN, et al. FEBS Lett, 1993 Mar 15. PMID 8384129
  3. Analysis of the nucleotide sequence of 53 kbp from the right terminus of the genome of variola major virus strain India-1967. Shchelkunov SN, et al. Virus Res, 1994 Dec. PMID 7856312
  4. Two types of deletions in orthopoxvirus genomes. Shchelkunov SN, et al. Virus Genes, 1995 Feb. PMID 7597802

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
hypothetical protein
NP_042083.1
  • hypothetical protein; The poxviridae are enveloped unsegmented dsDNA viruses; unlike many dsDNA viruses that replicate in the host nucleus poxviruses encode their own replication machinery and therefore replicate in the cytoplasm; viral genes are expressed in a bi-phasic manner with early genes encoding non-structural proteins involved in genome replication and late genes encoding the viral structural proteins

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001611.1 Reference assembly

    Range
    33321..33806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_042083.1 hypothetical protein VARVgp039 [Variola virus]

    See identical proteins and their annotated locations for NP_042083.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0DOR7, P0DOR8, P33873
    UniProtKB/TrEMBL
    A0A1U8QH69, Q0N5A8, Q0NCT3, Q0NGA0, Q0NM15, Q76Q38
    Conserved Domains (1) summary
    PHA02993
    Location:15 → 161
    PHA02993; hypothetical protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DOR8.1

Gene LinkOut

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