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LINC00662 long intergenic non-protein coding RNA 662 [ Homo sapiens (human) ]

Gene ID: 148189, updated on 17-Sep-2024

Summary

Official Symbol
LINC00662provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 662provided by HGNC
Primary source
HGNC:HGNC:27122
See related
Ensembl:ENSG00000261824 AllianceGenome:HGNC:27122
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 6.0), ovary (RPKM 2.2) and 25 other tissues See more
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Genomic context

See LINC00662 in Genome Data Viewer
Location:
19q11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (27790493..27793940, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (30318288..30321734, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (28281401..28284848, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904678 Neighboring gene NANOG hESC enhancer GRCh37_chr19:24584392-24584893 Neighboring gene NANOG hESC enhancer GRCh37_chr19:24585417-24585918 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:24625458-24626443 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:24630995-24631601 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27732451-27733302 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27733303-27734155 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27734156-27735007 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27735098-27735622 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27735920-27736488 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27736489-27737057 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27737089-27737964 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27737965-27738838 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27738839-27739712 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:27739713-27740586 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27813523-27814024 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27812477-27813220 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27808230-27808731 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27814077-27814586 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27836954-27837540 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27844808-27845309 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27874272-27875240 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27875298-27875799 Neighboring gene NANOG hESC enhancer GRCh37_chr19:27877672-27878173 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27894379-27895360 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27897397-27897916 Neighboring gene uncharacterized LOC105372345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14401 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:28286227-28287008 Neighboring gene long intergenic non-protein coding RNA 2987 Neighboring gene solute carrier family 25 member 1 pseudogene 5 Neighboring gene vomeronasal 1 receptor 95 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK311452, BC045720
    Related
    ENST00000659422.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    27790493..27793940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    30318288..30321734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)