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VNG_RS11535 type II toxin-antitoxin system Phd/YefM family antitoxin [ Halobacterium salinarum NRC-1 ]

Gene ID: 1449174, updated on 22-Oct-2024

Summary

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Gene symbol
VNG_RS11535
Gene description
type II toxin-antitoxin system Phd/YefM family antitoxin
Locus tag
VNG_RS11535
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG6288C; VNG_6288C
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Genomic context

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Location:
plasmid: pNRC200
Sequence:
NC_002608.1 (220233..220511)

NC_002608.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene winged helix-turn-helix domain-containing protein Neighboring gene type II toxin-antitoxin system RelE/ParE family toxin Neighboring gene transposase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002608.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation. Garcia-Pino A, et al. Nat Chem Biol, 2016 Jul. PMID 27159580
  2. Corepression of the P1 addiction operon by Phd and Doc. Magnuson R, et al. J Bacteriol, 1998 Dec. PMID 9829946, Free PMC Article
  3. Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation. Garcia-Pino A, et al. J Biol Chem, 2008 Nov 7. PMID 18757857, Free PMC Article
  4. Genome sequence of Halobacterium species NRC-1. Ng WV, et al. Proc Natl Acad Sci U S A, 2000 Oct 24. PMID 11016950, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
type II toxin-antitoxin system Phd/YefM family antitoxin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002608.1 Reference assembly

    Range
    220233..220511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010904139.1 MULTISPECIES: type II toxin-antitoxin system Phd/YefM family antitoxin [Halobacterium]

    See identical proteins and their annotated locations for WP_010904139.1

    UniProtKB/TrEMBL
    A0A4D6GWA4, A0A841HD16, A0A895AMI3, B0R9V3, Q9HHQ0
    Conserved Domains (1) summary
    COG2161
    Location:1 → 83
    StbD; Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family [Defense mechanisms]
Nucleotide Protein
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