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VNG_RS11505 carbohydrate ABC transporter permease [ Halobacterium salinarum NRC-1 ]

Gene ID: 1449167, updated on 22-Oct-2024

Summary

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Gene symbol
VNG_RS11505
Gene description
carbohydrate ABC transporter permease
Locus tag
VNG_RS11505
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG6279G; VNG_6279G
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Genomic context

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Location:
plasmid: pNRC200
Sequence:
NC_002608.1 (214632..215525)

NC_002608.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ABC transporter substrate-binding protein Neighboring gene carbohydrate ABC transporter permease Neighboring gene ABC transporter ATP-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002608.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895
  3. Learning the ABCs one at a time: structure and mechanism of ABC transporters. Ford RC, et al. Biochem Soc Trans, 2019 Feb 28. PMID 30626703
  4. Structure and mechanism of ABC transporters. Wilkens S. F1000Prime Rep, 2015. PMID 25750732, Free PMC Article
  5. Structural diversity of ABC transporters. ter Beek J, et al. J Gen Physiol, 2014 Apr. PMID 24638992, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
carbohydrate ABC transporter permease

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002608.1 Reference assembly

    Range
    214632..215525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010904132.1 MULTISPECIES: carbohydrate ABC transporter permease [Halobacterium]

    See identical proteins and their annotated locations for WP_010904132.1

    UniProtKB/TrEMBL
    A0A4D6GZW4, A0A841HC05, A0A895AGC6, B0R9U5, Q9HHQ7
    Conserved Domains (1) summary
    COG1175
    Location:8 → 290
    UgpA; ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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