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crtY lycopene beta-cyclase [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448578, updated on 22-Oct-2024

Summary

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Gene symbol
crtY
Gene description
lycopene beta-cyclase
Locus tag
VNG_RS08285
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG2137G; VNG_2137G
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Genomic context

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Sequence:
NC_002607.1 (1571291..1572004, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene DUF6276 family protein Neighboring gene V-type ATP synthase subunit D Neighboring gene Brp/Blh family beta-carotene 15,15'-dioxygenase Neighboring gene ATP synthase subunit B Neighboring gene ATP synthase subunit A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a lycopene beta-cyclase required for bacteriorhodopsin biogenesis in the archaeon Halobacterium salinarum. Peck RF, et al. J Bacteriol, 2002 Jun. PMID 12003928, Free PMC Article
  2. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  3. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
lycopene beta-cyclase
WP_012289440.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1571291..1572004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012289440.1 lycopene beta-cyclase [Halobacterium salinarum]

    See identical proteins and their annotated locations for WP_012289440.1

    UniProtKB/Swiss-Prot
    B0R753, Q9HNE5
    UniProtKB/TrEMBL
    A0A510N8G4, A0A841HAE3
    Conserved Domains (1) summary
    TIGR03462
    Location:136 → 226
    CarR_dom_SF; lycopene cyclase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HNE5.2