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trmY tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448457, updated on 22-Oct-2024

Summary

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Gene symbol
trmY
Gene description
tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY
Locus tag
VNG_RS07670
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG1980C; VNG_1980C
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Genomic context

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Sequence:
NC_002607.1 (1461293..1461883, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene tRNA-Pro Neighboring gene hypothetical protein Neighboring gene tRNA pseudouridine(54/55) synthase Pus10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1461293..1461883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010903455.1 MULTISPECIES: tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY [Halobacterium]

    See identical proteins and their annotated locations for WP_010903455.1

    UniProtKB/Swiss-Prot
    B0R6T1, Q9HNR6
    UniProtKB/TrEMBL
    A0A4D6GV18, A0A510N833, A0A841H8W8, A0A895AB59
    Conserved Domains (1) summary
    PRK02135
    Location:1 → 193
    PRK02135; hypothetical protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HNR6.1

Gene LinkOut

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