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VNG_RS05415 mechanosensitive ion channel domain-containing protein [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448012, updated on 17-Jun-2024

Summary

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Gene symbol
VNG_RS05415
Gene description
mechanosensitive ion channel domain-containing protein
Locus tag
VNG_RS05415
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG1388H; VNG_1388H
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Genomic context

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Sequence:
NC_002607.1 (1034506..1035285, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase Neighboring gene HEWD family protein Neighboring gene acyltransferase Neighboring gene hypothetical protein Neighboring gene diadenylate cyclase DacZ Neighboring gene tRNA-Leu

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Structural and functional differences between two homologous mechanosensitive channels of Methanococcus jannaschii. Kloda A, et al. EMBO J, 2001 Apr 17. PMID 11296222, Free PMC Article
  3. Molecular identification of a mechanosensitive channel in archaea. Kloda A, et al. Biophys J, 2001 Jan. PMID 11159397, Free PMC Article
  4. Mechanosensitive channels in prokaryotes. Martinac B. Cell Physiol Biochem, 2001. PMID 11275684
  5. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
mechanosensitive ion channel domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1034506..1035285 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010903009.1 mechanosensitive ion channel domain-containing protein [Halobacterium salinarum]

    See identical proteins and their annotated locations for WP_010903009.1

    UniProtKB/TrEMBL
    A0A4D6GTW2, A0A841H919, B0R5H8, Q9HQ04
    Conserved Domains (1) summary
    cl39057
    Location:149 → 245
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
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