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C9orf57 chromosome 9 open reading frame 57 [ Homo sapiens (human) ]

Gene ID: 138240, updated on 2-Nov-2024

Summary

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Official Symbol
C9orf57provided by HGNC
Official Full Name
chromosome 9 open reading frame 57provided by HGNC
Primary source
HGNC:HGNC:27037
See related
Ensembl:ENSG00000204669 AllianceGenome:HGNC:27037
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis (RPKM 8.9) See more
Orthologs
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Genomic context

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See C9orf57 in Genome Data Viewer
Location:
9q21.13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (72051376..72060613, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (84202221..84211458, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (74666292..74675529, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28457 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28455 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74534388-74534894 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74535401-74535906 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:74535907-74536412 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:74536413-74536918 Neighboring gene chromosome 9 open reading frame 85 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74568411-74569057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74578682-74579426 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:74579427-74580171 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:74604827-74606026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:74622307-74622838 Neighboring gene Sharpr-MPRA regulatory region 3495 Neighboring gene uncharacterized LOC101927108 Neighboring gene heat shock protein family B (small) member 1 pseudogene 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:74663139-74664338 Neighboring gene Sharpr-MPRA regulatory region 10456 Neighboring gene basic transcription factor 3 pseudogene 4 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:74761147-74762346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:74764055-74764556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:74764557-74765056 Neighboring gene guanine deaminase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C9orf57

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128618.2 → NP_001122090.2  uncharacterized protein C9orf57 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL138751
    Consensus CDS
    CCDS47980.2
    UniProtKB/Swiss-Prot
    A1L456, Q5W0N0
    UniProtKB/TrEMBL
    A0A494C0F4
    Related
    ENSP00000498279.1, ENST00000651200.2
    Conserved Domains (1) summary
    pfam15851
    Location:53 → 138
    DUF4723; Domain of unknown function (DUF4723)

  2. NM_001371610.1 → NP_001358539.1  uncharacterized protein C9orf57 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL138751
    Related
    ENST00000673779.1
    Conserved Domains (1) summary
    pfam15851
    Location:25 → 110
    DUF4723; Domain of unknown function (DUF4723)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    72051376..72060613 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    84202221..84211458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5W0N0.1 GenPept UniProtKB/Swiss-Prot:Q5W0N0

Gene LinkOut

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