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CPEB2 cytoplasmic polyadenylation element binding protein 2 [ Homo sapiens (human) ]

Gene ID: 132864, updated on 2-Nov-2024

Summary

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Official Symbol
CPEB2provided by HGNC
Official Full Name
cytoplasmic polyadenylation element binding protein 2provided by HGNC
Primary source
HGNC:HGNC:21745
See related
Ensembl:ENSG00000137449 MIM:610605; AllianceGenome:HGNC:21745
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CPEB-2; CPE-BP2; hCPEB-2
Summary
The protein encoded by this gene is highly similar to cytoplasmic polyadenylation element binding protein (CPEB), an mRNA-binding protein that regulates cytoplasmic polyadenylation of mRNA as a trans factor in oogenesis and spermatogenesis. Studies of the similar gene in mice suggested a possible role of this protein in transcriptionally inactive haploid spermatids. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]
Expression
Broad expression in testis (RPKM 12.0), skin (RPKM 7.9) and 24 other tissues See more
Orthologs
mouse all
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Genomic context

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See CPEB2 in Genome Data Viewer
Location:
4p15.32
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (15002481..15070151)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (14984261..15051932)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (15004105..15071775)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 504 Neighboring gene uncharacterized LOC105374496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14667012-14667571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21331 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14857565-14858764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21334 Neighboring gene uncharacterized LOC105374498 Neighboring gene CPEB2 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21335 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15294 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:15005985-15006551 Neighboring gene C1QTNF7 antisense RNA 1 Neighboring gene uncharacterized LOC124900673 Neighboring gene RN7SK pseudogene 170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. CPEB2 enhances cell growth and angiogenesis by upregulating ARPC5 mRNA stability in multiple myeloma. Zeng P, et al. J Orthop Surg Res, 2023 May 26. PMID 37231521, Free PMC Article
  2. The Alternative Splicing of Cytoplasmic Polyadenylation Element Binding Protein 2 Drives Anoikis Resistance and the Metastasis of Triple Negative Breast Cancer. Johnson RM, et al. J Biol Chem, 2015 Oct 16. PMID 26304115, Free PMC Article
  3. Tumor suppressor role of cytoplasmic polyadenylation element binding protein 2 (CPEB2) in human mammary epithelial cells. Tordjman J, et al. BMC Cancer, 2019 Jun 11. PMID 31185986, Free PMC Article
  4. A positive feedback self-regulatory loop between miR-210 and HIF-1α mediated by CPEB2 is involved in trophoblast syncytialization: implication of trophoblast malfunction in preeclampsia†. Wang H, et al. Biol Reprod, 2020 Mar 13. PMID 31616934
  5. Identification of microRNA 885-5p as a novel regulator of tumor metastasis by targeting CPEB2 in colorectal cancer. Lam CS, et al. Oncotarget, 2017 Apr 18. PMID 28460469, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A p53/CPEB2 negative feedback loop regulates renal cancer cell proliferation and migration.
    Title: A p53/CPEB2 negative feedback loop regulates renal cancer cell proliferation and migration.
  2. CPEB2 inhibit cell proliferation through upregulating p21 mRNA stability in glioma.
    Title: CPEB2 inhibit cell proliferation through upregulating p21 mRNA stability in glioma.
  3. CPEB2 enhances cell growth and angiogenesis by upregulating ARPC5 mRNA stability in multiple myeloma.
    Title: CPEB2 enhances cell growth and angiogenesis by upregulating ARPC5 mRNA stability in multiple myeloma.
  4. CPEB2 m6A methylation regulates blood-tumor barrier permeability by regulating splicing factor SRSF5 stability.
    Title: CPEB2 m6A methylation regulates blood-tumor barrier permeability by regulating splicing factor SRSF5 stability.
  5. The RNA binding protein CPEB2 regulates hormone sensing in mammary gland development and luminal breast cancer.
    Title: The RNA binding protein CPEB2 regulates hormone sensing in mammary gland development and luminal breast cancer.
  6. A positive feedback self-regulatory loop between miR-210 and HIF-1alpha mediated by CPEB2 is involved in trophoblast syncytialization: implication of trophoblast malfunction in preeclampsiadagger.
    Title: A positive feedback self-regulatory loop between miR-210 and HIF-1α mediated by CPEB2 is involved in trophoblast syncytialization: implication of trophoblast malfunction in preeclampsia†.
  7. Data demonstrated an increased occurrence of both SRSF3 and the CPEB2B isoform in triple negative breast cancer (TNBC), and identified a consensus binding motif for SRSF3 in the exon promoting the CPEB2B isoform. The study also suggests that the splicing event, which promotes the expression of CPEB2B, is driven by SRSF3 as well as linked to aggressive growth in metastatic TNBC.
    Title: Serine/Arginine-Rich Splicing Factor 3 Modulates the Alternative Splicing of Cytoplasmic Polyadenylation Element Binding Protein 2.
  8. CPEB2, presumably the isoform A, plays a key role in suppressing tumorigenesis in mammary epithelial cells by repressing EMT, migration, invasion, proliferation and stem-like cells phenotype, via multiple targets, including a newly-identified translational target p53.
    Title: Tumor suppressor role of cytoplasmic polyadenylation element binding protein 2 (CPEB2) in human mammary epithelial cells.
  9. Our findings demonstrated the overexpression of miR-885-5p in liver metastasis and its roles in inducing CRC metastasis, potentiating development of miR-885-5p inhibitor to treat advanced CRC in the future.
    Title: Identification of microRNA 885-5p as a novel regulator of tumor metastasis by targeting CPEB2 in colorectal cancer.
  10. Long non-coding RNA TUG1 mediates methotrexate resistance in colorectal cancer via miR-186/CPEB2 axis.
    Title: TUG1 mediates methotrexate resistance in colorectal cancer via miR-186/CPEB2 axis.
Submit: New GeneRIF Correction See all GeneRIFs (13)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC119575, MGC119576, MGC119577

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTPase inhibitor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables RNA binding HDA PubMed 
enables mRNA 3'-UTR AU-rich region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA regulatory element binding translation repressor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA regulatory element binding translation repressor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables ribosomal large subunit binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables ribosomal small subunit binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables ribosome binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ribosome binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables translation factor activity, RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cellular response to hypoxia IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in cellular response to insulin stimulus IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of cytoplasmic translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of cytoplasmic translational elongation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 2
Names
CPE-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177381.2 → NP_001170852.1  cytoplasmic polyadenylation element-binding protein 2 isoform C

    Status: REVIEWED

    Description
    Transcript Variant: This variant (C) lacks an alternate in-frame exon and uses an alternate in-frame splice site in the central coding region, compared to variant D. The resulting isoform (C) differs at an internal region, compared to isoform D.
    Source sequence(s)
    AC098829, AC105289, BC103939
    Consensus CDS
    CCDS56326.1
    UniProtKB/Swiss-Prot
    Q7Z5Q1
    Related
    ENSP00000414270.2, ENST00000442003.6
    Conserved Domains (4) summary
    COG0724
    Location:737 → 912
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:750 → 841
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:858 → 938
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:933 → 994
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  2. NM_001177382.2 → NP_001170853.1  cytoplasmic polyadenylation element-binding protein 2 isoform D

    Status: REVIEWED

    Description
    Transcript Variant: This variant (D) represents the longest transcript and encodes the longest isoform (D).
    Source sequence(s)
    AC098829, AC105289, BC103942
    Consensus CDS
    CCDS56325.1
    UniProtKB/Swiss-Prot
    Q7Z5Q1
    Related
    ENSP00000443985.1, ENST00000538197.7
    Conserved Domains (4) summary
    COG0724
    Location:764 → 939
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:777 → 868
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:885 → 965
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:960 → 1021
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  3. NM_001177383.2 → NP_001170854.1  cytoplasmic polyadenylation element-binding protein 2 isoform E

    Status: REVIEWED

    Description
    Transcript Variant: This variant (E) lacks an alternate in-frame exon in the central coding region, compared to variant D. The resulting isoform (E) lacks an internal segment, compared to isoform D.
    Source sequence(s)
    AC098829, AC105289, BC103941
    Consensus CDS
    CCDS93479.1
    UniProtKB/TrEMBL
    A0A5K1VW71
    Related
    ENSP00000371832.4, ENST00000382395.8
    Conserved Domains (4) summary
    COG0724
    Location:734 → 909
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:747 → 838
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:855 → 935
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:930 → 991
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  4. NM_001177384.2 → NP_001170855.1  cytoplasmic polyadenylation element-binding protein 2 isoform F

    Status: REVIEWED

    Description
    Transcript Variant: This variant (F) lacks two alternate in-frame exons and uses an alternate in-frame splice site in the central coding region, compared to variant D. The resulting isoform (F) differs at two internal regions, compared to isoform D.
    Source sequence(s)
    AC098829, AC105289, BC105925
    Consensus CDS
    CCDS93480.1
    UniProtKB/TrEMBL
    A0A5K1VW79
    Related
    ENSP00000371838.4, ENST00000382401.8
    Conserved Domains (4) summary
    COG0724
    Location:729 → 904
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:742 → 833
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:850 → 930
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:925 → 986
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  5. NM_182485.3 → NP_872291.2  cytoplasmic polyadenylation element-binding protein 2 isoform B

    Status: REVIEWED

    Description
    Transcript Variant: This variant (B) lacks two alternate in-frame exons in the central coding region, compared to variant D. The resulting isoform (B) lacks two internal segments, compared to isoform D.
    Source sequence(s)
    AC098829, AC105289, AY247744
    UniProtKB/TrEMBL
    A0A5K1VW93
    Related
    ENSP00000424084.2, ENST00000507071.6
    Conserved Domains (4) summary
    COG0724
    Location:756 → 931
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:769 → 860
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:877 → 957
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:952 → 1013
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  6. NM_182646.3 → NP_872587.2  cytoplasmic polyadenylation element-binding protein 2 isoform A

    Status: REVIEWED

    Description
    Transcript Variant: This variant (A) lacks an alternate in-frame exon in the central coding region, compared to variant D. The resulting isoform (A) lacks an internal segment, compared to isoform D.
    Source sequence(s)
    AC098829, AC105289, AY255519
    UniProtKB/TrEMBL
    A0A5K1VW61
    Related
    ENSP00000334058.4, ENST00000345451.8
    Conserved Domains (4) summary
    COG0724
    Location:726 → 901
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:739 → 830
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:847 → 927
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:922 → 983
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    15002481..15070151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005248135.4 → XP_005248192.2  cytoplasmic polyadenylation element-binding protein 2 isoform X1

    Conserved Domains (4) summary
    COG0724
    Location:767 → 942
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:780 → 871
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:888 → 968
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:963 → 1024
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  2. XM_011513777.4 → XP_011512079.1  cytoplasmic polyadenylation element-binding protein 2 isoform X2

    Conserved Domains (4) summary
    COG0724
    Location:759 → 934
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:772 → 863
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:880 → 960
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:955 → 1016
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  3. XM_011513778.4 → XP_011512080.1  cytoplasmic polyadenylation element-binding protein 2 isoform X3

  4. XM_011513779.3 → XP_011512081.1  cytoplasmic polyadenylation element-binding protein 2 isoform X4

  5. XM_017007734.3 → XP_016863223.1  cytoplasmic polyadenylation element-binding protein 2 isoform X5

    Conserved Domains (3) summary
    pfam16366
    Location:389 → 450
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:206 → 297
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:314 → 394
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  6. XM_017007733.2 → XP_016863222.1  cytoplasmic polyadenylation element-binding protein 2 isoform X5

    Conserved Domains (3) summary
    pfam16366
    Location:389 → 450
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:206 → 297
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:314 → 394
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  7. XM_047449609.1 → XP_047305565.1  cytoplasmic polyadenylation element-binding protein 2 isoform X6

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_013171799.1 Reference GRCh38.p14 PATCHES

    Range
    74375..89176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    14984261..15051932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054348925.1 → XP_054204900.1  cytoplasmic polyadenylation element-binding protein 2 isoform X1

  2. XM_054348926.1 → XP_054204901.1  cytoplasmic polyadenylation element-binding protein 2 isoform X2

  3. XM_054348927.1 → XP_054204902.1  cytoplasmic polyadenylation element-binding protein 2 isoform X3

  4. XM_054348928.1 → XP_054204903.1  cytoplasmic polyadenylation element-binding protein 2 isoform X4

  5. XM_054348929.1 → XP_054204904.1  cytoplasmic polyadenylation element-binding protein 2 isoform X5

  6. XM_054348930.1 → XP_054204905.1  cytoplasmic polyadenylation element-binding protein 2 isoform X5

  7. XM_054348931.1 → XP_054204906.1  cytoplasmic polyadenylation element-binding protein 2 isoform X6

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7Z5Q1.3 GenPept UniProtKB/Swiss-Prot:Q7Z5Q1

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