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fliD filament capping protein [ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ]

Gene ID: 1253481, updated on 4-Feb-2024

Summary

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Gene symbol
fliD
Gene description
filament capping protein
Locus tag
STM1960
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain: LT2, serovar: Typhimurium, sub-species: enterica, culture-collection: ATCC:700720, culture-collection: SGSC:1412, type-material: type strain of Salmonella enterica)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella
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Genomic context

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Sequence:
NC_003197.2 (2049387..2050802)

NC_003197.2Genomic Context describing neighboring genes Neighboring gene N-methylation of lysine residues in flagellin Neighboring gene flagellar biosynthesis; flagellin Neighboring gene repressor of class 3a and 3b operons (RflA activity) Neighboring gene putative export chaperone for FliD Neighboring gene cytoplasmic alpha-amylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003197.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Self-Oligomerizing Structure of the Flagellar Cap Protein FliD and Its Implication in Filament Assembly. Song WS, et al. J Mol Biol, 2017 Mar 24. PMID 28179186
  2. Recognition and targeting mechanisms by chaperones in flagellum assembly and operation. Khanra N, et al. Proc Natl Acad Sci U S A, 2016 Aug 30. PMID 27528687, Free PMC Article
  3. Multiple promoters contribute to swarming and the coordination of transcription with flagellar assembly in Salmonella. Wozniak CE, et al. J Bacteriol, 2010 Sep. PMID 20639318, Free PMC Article
  4. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. McClelland M, et al. Nature, 2001 Oct 25. PMID 11677609

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The solution structure of the FliT chaperone in the free state and in complex with FliD and the flagellar ATPase FliI has been determined.
    Title: Recognition and targeting mechanisms by chaperones in flagellum assembly and operation.
  2. Escherichia coli FliD consists of three domains (D1, D2, and D3) and forms a hexamer plate of the D2 and D3 domains that resembles a six-pointed star with legs consisting of the D1 domain. In contrast, the D2 and D3 domains of Salmonella typhimurium FliD assemble into a pentamer as a five-pointed star plate. Despite their distinct oligomeric states, ecFliD and stFliD engage a common molecular surface for oligomerization.
    Title: Self-Oligomerizing Structure of the Flagellar Cap Protein FliD and Its Implication in Filament Assembly.
  3. The expression of the hook-associated proteins (FlgK, FlgL, and FliD) from class 3 promoters was found to be important for swarming motility.
    Title: Multiple promoters contribute to swarming and the coordination of transcription with flagellar assembly in Salmonella.
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General gene information

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regulatory

  • Loc: 2049387-2049392 regulatory_class = ribosome_binding_site

General protein information

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Preferred Names
filament capping protein
NP_460913.1
  • flagellar biosynthesis; enables filament assembly; flagellar hook-associated protein 2 (HAP2) (filament CAP protein)(flagellar CAP protein). (SW:FLID_SALTY)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003197.2 Reference assembly

    Range
    2049387..2050802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_460913.1 filament capping protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

    See identical proteins and their annotated locations for NP_460913.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5U2LW03, A0A5Y2SDG3, A0A626FC73, A0A634D7V9, A0A638PR15, A0A6X8T5L6, A0A6Y2VHG7, A0A707R5D6, A0A711A5T9, A0A712QD28, A0A719D2I7, A0A725HEU0, A0A743Q274, A0A747HWD5, A0A749BV99, A0A749PH71, A0A757GZD0, A0A763QJM7
    Conserved Domains (1) summary
    PRK08032
    Location:1 → 462
    fliD; flagellar capping protein; Reviewed
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P16328.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases