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LYST lysosomal trafficking regulator [ Pantherophis guttatus ]

Gene ID: 117671969, updated on 19-Mar-2024

Summary

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Gene symbol
LYST
Gene description
lysosomal trafficking regulator
See related
EnsemblRapid:ENSPGUG00005018254
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See LYST in Genome Data Viewer
Location:
chromosome: Un
Exon count:
53
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844038.1 (27266328..27364828, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010793.1 (39748226..39846789)

NW_026844038.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2 Neighboring gene uncharacterized LOC117671970 Neighboring gene G protein subunit gamma 4 Neighboring gene nidogen 1 Neighboring gene G protein-coupled receptor 137B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal-trafficking regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844038.1 Reference CU_Pguttatus_1

    Range
    27266328..27364828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034428301.2 → XP_034284192.1  lysosomal-trafficking regulator

    UniProtKB/TrEMBL
    A0A6P9CLQ9
    Related
    ENSPGUP00005025838.1
    Conserved Domains (4) summary
    smart01026
    Location:3106 → 3396
    Beach; Beige/BEACH domain
    cd01201
    Location:2986 → 3091
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3499 → 3536
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3500 → 3749
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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