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H3P5 H3 histone pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 115482712, updated on 17-Sep-2024

Summary

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Official Symbol
H3P5provided by HGNC
Official Full Name
H3 histone pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:43798
See related
AllianceGenome:HGNC:43798
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
p12
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Genomic context

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See H3P5 in Genome Data Viewer
Location:
2p23.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (30210027..30210490)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (30254268..30254732)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (30432893..30433356)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374414 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:30413091-30413789 Neighboring gene uncharacterized LOC124907749 Neighboring gene Sharpr-MPRA regulatory region 12598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:30416411-30416970 Neighboring gene small nucleolar RNA, H/ACA box 10B Neighboring gene ReSE screen-validated silencer GRCh37_chr2:30431474-30431698 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:30440807-30442006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15534 Neighboring gene Sharpr-MPRA regulatory region 4877 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:30453066-30453581 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:30453582-30454096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11326 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11327 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11328 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:30459095-30459302 Neighboring gene LBH regulator of WNT signaling pathway Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:30488856-30489470 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:30489471-30490085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15535 Neighboring gene NANOG hESC enhancer GRCh37_chr2:30511920-30512428 Neighboring gene uncharacterized LOC102723594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15536 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15537 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:30517185-30517355

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human histone H3 complement anno 2011. Ederveen TH, et al. Biochim Biophys Acta, 2011 Oct. PMID 21782046

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_066057.2 

    Range
    101..564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    30210027..30210490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    30254268..30254732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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