U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC11443562 nuclear transcription factor Y subunit A-1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11443562, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC11443562
Gene description
nuclear transcription factor Y subunit A-1
Locus tag
MtrunA17_Chr3g0103391
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
Also known as
NF-YA5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC11443562 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (27758915..27762785, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (24529753..24533628, complement)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11443179 Neighboring gene uncharacterized LOC11443180 Neighboring gene uncharacterized protein ycf20 Neighboring gene cyclin-dependent protein kinase inhibitor SMR13

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear transcription factor Y subunit A-1
Names
CCAAT-binding transcription factor
nuclear transcription factor Y subunit A5
putative transcription factor Hap2/NF-YA family

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    27758915..27762785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024779710.2 → XP_024635478.1  nuclear transcription factor Y subunit A-1

    UniProtKB/TrEMBL
    A0A0C3VH73, A0A0C3VH74, G7IYA4, G7IYA5, I3TAV5
    Conserved Domains (1) summary
    pfam02045
    Location:171 → 226
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_003600420.4 → XP_003600468.2  nuclear transcription factor Y subunit A-1

    UniProtKB/TrEMBL
    A0A0C3VH73, A0A0C3VH74, G7IYA4, G7IYA5, I3TAV5
    Conserved Domains (1) summary
    pfam02045
    Location:171 → 226
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases