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LOC11438339 GRAS family protein RAM1-like [ Medicago truncatula (barrel medic) ]

Gene ID: 11438339, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11438339
Gene description
GRAS family protein RAM1-like
Locus tag
MtrunA17_Chr7g0224271
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
Also known as
RAM1; MtRAM1
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Genomic context

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See LOC11438339 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (9491468..9493880, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (9071924..9074814, complement)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene putative mediator of RNA polymerase II transcription subunit 26 Neighboring gene membrane-anchored ubiquitin-fold protein 4 Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC120576886 Neighboring gene uncharacterized LOC11446874 Neighboring gene uncharacterized LOC11446872

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A GRAS-type transcription factor with a specific function in mycorrhizal signaling. Gobbato E, et al. Curr Biol, 2012 Dec 4. PMID 23122845
  2. A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Wang E, et al. Curr Biol, 2012 Dec 4. PMID 23122843
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GRAS family protein RAM1
Names
GRAS family transcription factor
MtrunA17_Chr7g0224271
Protein REQUIRED FOR ARBUSCULAR MYCORRHIZATION 1
putative transcription factor GRAS family
required for arbuscular mycorrhization 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    9491468..9493880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003622047.3 → XP_003622095.1  GRAS family protein RAM1

    See identical proteins and their annotated locations for XP_003622095.1

    UniProtKB/Swiss-Prot
    G7L166
    Conserved Domains (1) summary
    pfam03514
    Location:303 → 673
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G7L166.1 GenPept UniProtKB/Swiss-Prot:G7L166

Gene LinkOut

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Molecular Biology Databases