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LOC11437627 protein FD [ Medicago truncatula (barrel medic) ]

Gene ID: 11437627, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11437627
Gene description
protein FD
Locus tag
MtrunA17_Chr8g0371411
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11437627 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (34228840..34230321)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (31760195..31761890)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11440552 Neighboring gene la-related protein 1C Neighboring gene uncharacterized LOC11440553 Neighboring gene protein MID1-COMPLEMENTING ACTIVITY 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FD
Names
BZIP transcription factor
putative transcription factor bZIP family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    34228840..34230321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039828641.1 → XP_039684575.1  protein FD isoform X1

    UniProtKB/TrEMBL
    A0A0C3Y393, G7LB63
    Conserved Domains (1) summary
    cd14707
    Location:107 → 152
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_024773289.2 → XP_024629057.1  protein FD isoform X2

    UniProtKB/TrEMBL
    A0A0C3Y393, G7LB63
    Conserved Domains (1) summary
    cd14707
    Location:107 → 153
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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