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LOC11435341 truncated transcription factor CAULIFLOWER A [ Medicago truncatula (barrel medic) ]

Gene ID: 11435341, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11435341
Gene description
truncated transcription factor CAULIFLOWER A
Locus tag
MtrunA17_Chr5g0420081
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11435341 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (20434966..20441011, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (20508955..20514975, complement)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 2 Neighboring gene protein BIG GRAIN 1-like E Neighboring gene agamous-like MADS-box protein MADS2 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
truncated transcription factor CAULIFLOWER A
Names
MADS-box transcription factor
putative transcription factor MADS-MIKC family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    20434966..20441011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003614186.4 → XP_003614234.3  truncated transcription factor CAULIFLOWER A

    UniProtKB/TrEMBL
    A0A0C3XJK6, A0A396HSY7, G7JX12
    Conserved Domains (2) summary
    cd00265
    Location:2 → 73
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:83 → 171
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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