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LOC11429040 homeobox-leucine zipper protein ATHB-5 [ Medicago truncatula (barrel medic) ]

Gene ID: 11429040, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11429040
Gene description
homeobox-leucine zipper protein ATHB-5
Locus tag
MtrunA17_Chr3g0119291
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11429040 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (39694485..39695895, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (36230208..36231577, complement)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene nucleotide exchange factor SIL1 Neighboring gene metal tolerance protein 10 Neighboring gene protein FAM91A1 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ATHB-5
Names
homeobox associated leucine zipper protein
putative transcription factor Homobox-WOX family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    39694485..39695895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003601333.4 → XP_003601381.1  homeobox-leucine zipper protein ATHB-5

    See identical proteins and their annotated locations for XP_003601381.1

    UniProtKB/TrEMBL
    A0A072UZ99, G7J6Q0
    Conserved Domains (2) summary
    pfam00046
    Location:66 → 112
    Homeobox; Homeobox domain
    pfam02183
    Location:114 → 155
    HALZ; Homeobox associated leucine zipper
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases