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LOC11428867 homeobox-leucine zipper protein ATHB-8 [ Medicago truncatula (barrel medic) ]

Gene ID: 11428867, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11428867
Gene description
homeobox-leucine zipper protein ATHB-8
Locus tag
MtrunA17_Chr3g0140351
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11428867 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (54742777..54748254)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (51354270..51359751)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene probable pectin methylesterase CGR2 Neighboring gene GATA transcription factor 9 Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 Neighboring gene protein ALTERED XYLOGLUCAN 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ATHB-8
Names
class III homeodomain leucine zipper protein
putative transcription factor & lipid binding HD-SAD family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    54742777..54748254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003603582.4 → XP_003603630.2  homeobox-leucine zipper protein ATHB-8

    UniProtKB/TrEMBL
    A0A072VD23, A0A0C3VR83, G7J3H4
    Conserved Domains (4) summary
    cd08875
    Location:154 → 369
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cd14686
    Location:72 → 111
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    pfam00046
    Location:20 → 77
    Homeobox; Homeobox domain
    pfam08670
    Location:693 → 830
    MEKHLA; MEKHLA domain
Nucleotide Protein
Heading Accession and Version

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