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LOC11427946 agamous-like MADS-box protein AGL11 [ Medicago truncatula (barrel medic) ]

Gene ID: 11427946, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11427946
Gene description
agamous-like MADS-box protein AGL11
Locus tag
MtrunA17_Chr3g0077501
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11427946 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (263911..270427, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (244161..250680, complement)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene regulator of nonsense transcripts UPF3 Neighboring gene eukaryotic translation initiation factor 1A Neighboring gene cellulose synthase-like protein G3 Neighboring gene beta-galactosidase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL11
Names
MADS-box transcription factor
putative transcription factor MADS-MIKC family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    263911..270427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039831275.1 → XP_039687209.1  agamous-like MADS-box protein AGL11 isoform X3

    UniProtKB/TrEMBL
    G7IYF4
    Conserved Domains (1) summary
    cd00265
    Location:2 → 76
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  2. XM_039831276.1 → XP_039687210.1  agamous-like MADS-box protein AGL11 isoform X3

    UniProtKB/TrEMBL
    G7IYF4
    Conserved Domains (1) summary
    cd00265
    Location:2 → 76
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  3. XM_024777895.2 → XP_024633663.2  agamous-like MADS-box protein AGL11 isoform X2

    UniProtKB/TrEMBL
    G7IYF4
    Conserved Domains (1) summary
    cd00265
    Location:17 → 91
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  4. XM_039831274.1 → XP_039687208.1  agamous-like MADS-box protein AGL11 isoform X1

    UniProtKB/TrEMBL
    G7IYF4
    Conserved Domains (1) summary
    cd00265
    Location:17 → 91
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
Nucleotide Protein
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