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LOC11419004 G-box-binding factor 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11419004, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11419004
Gene description
G-box-binding factor 1
Locus tag
MtrunA17_Chr8g0373571
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11419004 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (35678480..35684013, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (33206127..33211700, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein GAI-ASSOCIATED FACTOR 1 Neighboring gene scarecrow-like protein 15 Neighboring gene uncharacterized LOC112417421 Neighboring gene uncharacterized LOC120577305

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G-box-binding factor 1
Names
bZIP transcription factor family protein
putative transcription factor bZIP family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    35678480..35684013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039829449.1 → XP_039685383.1  G-box-binding factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A072U3Q1, G7LEV3
    Conserved Domains (4) summary
    smart00338
    Location:257 → 320
    BRLZ; basic region leucin zipper
    cd14702
    Location:261 → 311
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 96
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:125 → 229
    MFMR_assoc; Disordered region downstream of MFMR

  2. XM_003629432.4 → XP_003629480.1  G-box-binding factor 1 isoform X1

    See identical proteins and their annotated locations for XP_003629480.1

    UniProtKB/TrEMBL
    A0A072U3Q1, G7LEV4
    Conserved Domains (4) summary
    smart00338
    Location:259 → 322
    BRLZ; basic region leucin zipper
    cd14702
    Location:263 → 313
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 96
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:127 → 229
    MFMR_assoc; Disordered region downstream of MFMR
Nucleotide Protein
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