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LOC11417600 telomere repeat-binding protein 5 [ Medicago truncatula (barrel medic) ]

Gene ID: 11417600, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11417600
Gene description
telomere repeat-binding protein 5
Locus tag
MtrunA17_Chr2g0328331
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11417600 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (47654132..47659639)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (41547105..41552606)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene non-classical arabinogalactan protein 30 Neighboring gene respirasome Complex Assembly Factor 1 Neighboring gene scarecrow-like protein 33 Neighboring gene scarecrow-like protein 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding protein 5
Names
putative transcription factor MYB-HB-like family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    47654132..47659639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024776766.2 → XP_024632534.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A0C3V8C2, G7IHQ2
    Conserved Domains (2) summary
    cd11660
    Location:627 → 677
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:431 → 501
    Ubiquitin_4; Ubiquitin-like domain

  2. XM_024776765.2 → XP_024632533.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A0C3V8C2, G7IHQ2
    Conserved Domains (2) summary
    cd11660
    Location:627 → 677
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:431 → 501
    Ubiquitin_4; Ubiquitin-like domain

  3. XM_003597316.4 → XP_003597364.2  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A0C3V8C2, G7IHQ2
    Conserved Domains (2) summary
    cd11660
    Location:627 → 677
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:431 → 501
    Ubiquitin_4; Ubiquitin-like domain

  4. XM_024776767.2 → XP_024632535.1  telomere repeat-binding protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A072VBR4
    Conserved Domains (2) summary
    cl21498
    Location:627 → 648
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cl28408
    Location:430 → 489
    UBQ; Ubiquitin homologues

  5. XM_039830859.1 → XP_039686793.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A0C3V8C2, G7IHQ2
    Conserved Domains (2) summary
    cd11660
    Location:627 → 677
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:431 → 501
    Ubiquitin_4; Ubiquitin-like domain
Nucleotide Protein
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