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LOC11415523 transcription factor SPATULA [ Medicago truncatula (barrel medic) ]

Gene ID: 11415523, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11415523
Gene description
transcription factor SPATULA
Locus tag
MtrunA17_Chr5g0402031
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11415523 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (6183463..6186706)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (6175613..6178872)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF12 Neighboring gene probable histone acetyltransferase HAC-like 2 Neighboring gene nicotinate phosphoribosyltransferase 2 Neighboring gene DNA polymerase alpha catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPATULA
Names
helix loop helix DNA-binding domain protein
putative transcription factor bHLH family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    6183463..6186706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003611666.4 → XP_003611714.1  transcription factor SPATULA

    See identical proteins and their annotated locations for XP_003611714.1

    UniProtKB/TrEMBL
    G7K6L5
    Conserved Domains (1) summary
    smart00353
    Location:117 → 165
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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