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LOC11414668 transcription factor TCP19 [ Medicago truncatula (barrel medic) ]

Gene ID: 11414668, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11414668
Gene description
transcription factor TCP19
Locus tag
MtrunA17_Chr1g0204001
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11414668 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (49610712..49612319)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (45965192..45966782)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene protein HOTHEAD Neighboring gene molybdenum cofactor sulfurase Neighboring gene uncharacterized LOC112416307 Neighboring gene peroxidase 66 Neighboring gene uncharacterized LOC11422845

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TCP19
Names
TCP family transcription factor
putative transcription factor TCP family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    49610712..49612319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024769658.2 → XP_024625426.1  transcription factor TCP19

    UniProtKB/TrEMBL
    A0A072VQN8, G7IC21
    Conserved Domains (1) summary
    pfam03634
    Location:63 → 158
    TCP; TCP family transcription factor

  2. XM_024769674.2 → XP_024625442.1  transcription factor TCP19

    UniProtKB/TrEMBL
    A0A072VQN8, G7IC21
    Conserved Domains (1) summary
    pfam03634
    Location:63 → 158
    TCP; TCP family transcription factor

  3. XM_024769665.2 → XP_024625433.1  transcription factor TCP19

    UniProtKB/TrEMBL
    A0A072VQN8, G7IC21
    Conserved Domains (1) summary
    pfam03634
    Location:63 → 158
    TCP; TCP family transcription factor
Nucleotide Protein
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