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LOC11413259 homeobox-leucine zipper protein REVOLUTA [ Medicago truncatula (barrel medic) ]

Gene ID: 11413259, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11413259
Gene description
homeobox-leucine zipper protein REVOLUTA
Locus tag
MtrunA17_Chr2g0326731
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11413259 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (46418543..46424056)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (40311806..40317322)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene vacuolar fusion protein MON1 homolog Neighboring gene double-stranded RNA-binding protein 2 Neighboring gene serine/threonine-protein phosphatase 6 regulatory subunit 3 Neighboring gene ubiquitin-like protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein REVOLUTA
Names
class III homeodomain leucine zipper protein
putative transcription factor & lipid binding HD-SAD family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    46418543..46424056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003597204.4 → XP_003597252.2  homeobox-leucine zipper protein REVOLUTA

    UniProtKB/TrEMBL
    A0A396JCR0, G7IRT7
    Conserved Domains (4) summary
    cd08875
    Location:158 → 372
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    smart00338
    Location:75 → 128
    BRLZ; basic region leucin zipper
    pfam00046
    Location:23 → 81
    Homeobox; Homeobox domain
    pfam08670
    Location:697 → 838
    MEKHLA; MEKHLA domain
Nucleotide Protein
Heading Accession and Version

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