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LOC11412894 plant UBX domain-containing protein 2 [ Medicago truncatula (barrel medic) ]

Gene ID: 11412894, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11412894
Gene description
plant UBX domain-containing protein 2
Locus tag
MtrunA17_Chr8g0391471
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11412894 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (48368557..48371639, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (44235562..44238666, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene dynein light chain LC6, flagellar outer arm Neighboring gene F-box protein SKIP28 Neighboring gene uncharacterized LOC112417270 Neighboring gene protein ALTERED XYLOGLUCAN 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plant UBX domain-containing protein 2
Names
plant UBX domain protein
putative transcription factor C2H2 family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    48368557..48371639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003630866.4 → XP_003630914.1  plant UBX domain-containing protein 2

    See identical proteins and their annotated locations for XP_003630914.1

    UniProtKB/TrEMBL
    G7LAI2
    Conserved Domains (2) summary
    cd09212
    Location:174 → 258
    PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins
    cl00155
    Location:357 → 434
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

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