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LOC11409715 zinc finger protein 4 [ Medicago truncatula (barrel medic) ]

Gene ID: 11409715, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11409715
Gene description
zinc finger protein 4
Locus tag
MtrunA17_Chr3g0110091
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11409715 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (32841354..32844042, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (29334732..29337426, complement)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120579600 Neighboring gene importin-5 Neighboring gene U-box domain-containing protein 21 Neighboring gene agamous-like MADS-box protein AGL80

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of abscisic acid-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 4
Names
putative transcription factor C2H2 family
zinc finger-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    32841354..32844042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024778195.2 → XP_024633963.1  zinc finger protein 4

    UniProtKB/TrEMBL
    G7J8Q3
    Conserved Domains (1) summary
    cd20908
    Location:88 → 115
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_003600631.4 → XP_003600679.1  zinc finger protein 4

    See identical proteins and their annotated locations for XP_003600679.1

    UniProtKB/TrEMBL
    G7J8Q3
    Conserved Domains (1) summary
    cd20908
    Location:88 → 115
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_039831385.1 → XP_039687319.1  zinc finger protein 4

    UniProtKB/TrEMBL
    G7J8Q3
    Conserved Domains (1) summary
    cd20908
    Location:88 → 115
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
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