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LOC11409256 agamous-like MADS-box protein AGL80 [ Medicago truncatula (barrel medic) ]

Gene ID: 11409256, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11409256
Gene description
agamous-like MADS-box protein AGL80
Locus tag
MtrunA17_Chr3g0106421
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11409256 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (30200225..30200875)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (26895858..26896508)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene N-terminal acetyltransferase B complex auxiliary subunit NAA25 Neighboring gene PRA1 family protein B1 Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene exocyst complex component EXO70B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL80
Names
MADS-box transcription factor family protein
putative transcription factor MADS-type1 family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    30200225..30200875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024778894.1 → XP_024634662.1  agamous-like MADS-box protein AGL80

    UniProtKB/TrEMBL
    A0A396IQ30, G7IWW4
    Conserved Domains (1) summary
    cd00266
    Location:1 → 57
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
Nucleotide Protein
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