U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CDK13-DT CDK13 divergent transcript [ Homo sapiens (human) ]

Gene ID: 112267983, updated on 13-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
CDK13-DTprovided by HGNC
Official Full Name
CDK13 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55407
See related
AllianceGenome:HGNC:55407
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CDK13-DT in Genome Data Viewer
Location:
7p14.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (39947521..39949419, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (40105023..40106919, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (39987120..39989018, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928688 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:39894264-39894799 Neighboring gene RWD domain containing 4 pseudogene 2 Neighboring gene RNA, 7SL, cytoplasmic 496, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39954013-39954514 Neighboring gene Sharpr-MPRA regulatory region 5390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25884 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39988304-39989223 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39989224-39990142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18115 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18116 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39991063-39991981 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:40015128-40015628 Neighboring gene cyclin dependent kinase 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:40017861-40018605 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25889 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:40095303-40095542 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

Go to the top of the page Help

Homology

Clone Names

  • AC072061.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_158201.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC072061, BC035135

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    39947521..39949419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    40105023..40106919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases