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CAMTA1-DT CAMTA1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 110841581, updated on 1-Oct-2024

Summary

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Official Symbol
CAMTA1-DTprovided by HGNC
Official Full Name
CAMTA1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53020
See related
AllianceGenome:HGNC:53020
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncCAMTA1
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Genomic context

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See CAMTA1-DT in Genome Data Viewer
Location:
1p36.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (6783892..6784980, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (6311732..6312820, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (6843952..6845040, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene long intergenic non-protein coding RNA 1672 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:6843880-6844556 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:6844557-6845231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 177 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 178 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6868944-6869444 Neighboring gene uncharacterized LOC124903832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6927405-6928137 Neighboring gene calmodulin binding transcription activator 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969150-6969650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6967713-6968438 Neighboring gene ribosomal protein L37 pseudogene 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969651-6970151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6990406-6990906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7011017-7011720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7016017-7016546 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7016547-7017077 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7017078-7017607 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 181 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7029419-7029919 Neighboring gene MPRA-validated peak33 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7039565-7040410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 183 Neighboring gene CAMTA1 antisense RNA 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long Noncoding RNA lncCAMTA1 Promotes Proliferation and Cancer Stem Cell-Like Properties of Liver Cancer by Inhibiting CAMTA1. Ding LJ, et al. Int J Mol Sci, 2016 Sep 23. PMID 27669232, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149049.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BM670173, HY064228

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    6783892..6784980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    6311732..6312820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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