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SCO4190 GntR family transcriptional regulator [ Streptomyces coelicolor A3(2) ]

Gene ID: 1099630, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO4190
Gene description
GntR family transcriptional regulator
Locus tag
SCO4190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
2SCD46.04
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: 4598689-4598841 Pfam match to entry PF00392 gntR, Bacterial regulatory proteins, gntR family, score 69.30, E-value 7.2e-20

General protein information

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Names
GntR family transcriptional regulator
NP_628365.1
  • 2SCD46.04, possible GntR-family transcriptional regulator, len: 291aa; similar to many eg. TR:Q9RIQ2 (EMBL:AJ243257) KorA protein from plasmid pSNA1 of Streptomyces natalensis (245 aa) fasta scores; opt: 175, z-score: 209.9, E(): 0.00033, 29.9% identity in 194 aa overlap. Also strongly similar to neighbouring CDS 2SCD46.02 fasta scores; opt: 1074, z-score: 984.2, E(): 0, 57.6% identity in 302 aa overlap. Contains Pfam match to entry PF00392 gntR, Bacterial regulatory proteins, gntR family and helix-turn-helix motif (Score 2173 (+6.59 SD)) at residue 41-62. Note possible alternative downstream translational start codons.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    4598629..4599504
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_628365.1 GntR family transcriptional regulator [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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