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LOC107987046 uncharacterized LOC107987046 [ Homo sapiens (human) ]

Gene ID: 107987046, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107987046
Gene description
uncharacterized LOC107987046
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987046 in Genome Data Viewer
Location:
9p24.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (6228232..6328268, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (6233292..6333332, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902116 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28183 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:6084860-6086059 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:6086910-6088109 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:6106510-6107010 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:6107011-6107511 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:6152686-6153885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:6166539-6167040 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:6182382-6182966 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:6182967-6183551 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28185 Neighboring gene general transcription factor IIIA pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19763 Neighboring gene interleukin 33 Neighboring gene selenoprotein T pseudogene 1 Neighboring gene TPD52 like 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19764 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19765 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28186 Neighboring gene ubiquitin like with PHD and ring finger domains 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    6228232..6328268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746614.2 RNA Sequence

  2. XR_001746613.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    6233292..6333332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079897.1 RNA Sequence

  2. XR_007079896.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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