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LOC107986943 uncharacterized LOC107986943 [ Homo sapiens (human) ]

Gene ID: 107986943, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986943
Gene description
uncharacterized LOC107986943
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986943 in Genome Data Viewer
Location:
8q11.23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (52915474..52928247)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (53291905..53304673)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:53541841-53542555 Neighboring gene RB1 inducible coiled-coil 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:53566637-53567138 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:53567139-53567638 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19189 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19191 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27348 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:53650644-53651144 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:53651145-53651645 Neighboring gene uncharacterized LOC105375835 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:53676283-53677482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27349 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:53764919-53765152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:53851917-53852548 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:53852549-53853180 Neighboring gene NANOG hESC enhancer GRCh37_chr8:53883082-53883583 Neighboring gene E3 ubiquitin-protein ligase RING2-like Neighboring gene neuropeptides B and W receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    52915474..52928247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745899.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    53291905..53304673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078986.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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