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LOC107986854 uncharacterized LOC107986854 [ Homo sapiens (human) ]

Gene ID: 107986854, updated on 22-Oct-2024

Summary

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Gene symbol
LOC107986854
Gene description
uncharacterized LOC107986854
See related
Ensembl:ENSG00000307342
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986854 in Genome Data Viewer
Location:
7q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (140231486..140254209)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:139876416-139877339 Neighboring gene KDM7A divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26774 Neighboring gene VISTA enhancer hs2082 Neighboring gene RNA, U6 small nuclear 797, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18708 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18709 Neighboring gene Sharpr-MPRA regulatory region 12666 Neighboring gene RNA, U1 small nuclear 58, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26777 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:139964853-139965044 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:139973046-139973341 Neighboring gene uncharacterized LOC105375534 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000007.14 Chromosome 7 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    140231486..140254209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745386.2 RNA Sequence

    Related
    ENST00000825226.1
Nucleotide Protein
Heading Accession and Version

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