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LOC107986832 uncharacterized LOC107986832 [ Homo sapiens (human) ]

Gene ID: 107986832, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986832
Gene description
uncharacterized LOC107986832
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986832 in Genome Data Viewer
Location:
7q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (101575745..101591775)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (102895633..102911577)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101015900-101016438 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101029559-101030174 Neighboring gene Sharpr-MPRA regulatory region 586 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:101041899-101042500 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101044285-101044812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101054568-101055111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101063681-101064232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101064233-101064784 Neighboring gene NANOG hESC enhancer GRCh37_chr7:101065582-101066107 Neighboring gene collagen type XXVI alpha 1 chain Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101079627-101080270 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101080271-101080912 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:101081787-101082746 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101104635-101105147 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101128605-101129258 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101129259-101129911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101137182-101137752 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101137753-101138322 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101146871-101147560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101147561-101148250 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101150569-101151328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101185407-101186075 Neighboring gene Sharpr-MPRA regulatory region 7535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101207140-101208002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101208003-101208864 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101241532-101242460 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101242461-101243388 Neighboring gene long intergenic non-protein coding RNA 1007 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101257215-101258142 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101258143-101259071 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101259072-101259999 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101262113-101262652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101262653-101263192 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101267192-101268119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:7310423-7310940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:7309904-7310422 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101342297-101342944 Neighboring gene myosin light chain 10 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:101349551-101349730 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101376622-101377520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26408 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26409 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101386177-101387120 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101387749-101388269 Neighboring gene NANOG hESC enhancer GRCh37_chr7:101447145-101447694 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18490 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18495 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18496 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18494 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18493 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:101459162-101460090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101464366-101465068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101467637-101468199 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101475068-101475709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26410 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101504139-101504852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101520321-101521126 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:101526861-101527028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26411 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18497 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101533527-101534237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101539593-101540093 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101539092-101539592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101543621-101544120 Neighboring gene cut like homeobox 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101578117-101578688 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101578689-101579260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101579261-101579832 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101579833-101580404 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101583727-101584614 Neighboring gene Sharpr-MPRA regulatory region 4286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101585503-101586390 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:101595769-101596968 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101621873-101622514 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26413 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26414 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:101630224-101631423 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101628325-101629237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101632213-101633022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26417 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101641118-101641805 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101641806-101642492 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26418 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:101679949-101680151 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26419 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101707086-101707802 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:101711090-101711280 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101738967-101739478 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:101740358-101741557 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101745526-101746202 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101746203-101746878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101744759-101745258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101744257-101744758 Neighboring gene Sharpr-MPRA regulatory region 1808 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:101762457-101762956 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:101766794-101767020 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101768501-101769053 Neighboring gene Sharpr-MPRA regulatory region 3063 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:101793464-101793605 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101796109-101796814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101806365-101807260 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101807261-101808154 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101812271-101812822 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:101812823-101813373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:101821837-101822337 Neighboring gene small nucleolar RNA SNORA48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    101575745..101591775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745314.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    102895633..102911577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077769.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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