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LOC107986652 uncharacterized LOC107986652 [ Homo sapiens (human) ]

Gene ID: 107986652, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986652
Gene description
uncharacterized LOC107986652
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986652 in Genome Data Viewer
Location:
6q24.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (140036269..140092995, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (141219986..141276696, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene FOXO induced long non-coding RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr6:140205336-140205876 Neighboring gene VISTA enhancer hs1644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25173 Neighboring gene Sharpr-MPRA regulatory region 3903 Neighboring gene uncharacterized LOC103352541 Neighboring gene Sharpr-MPRA regulatory region 1100 Neighboring gene long intergenic non-protein coding RNA 2941 Neighboring gene uncharacterized LOC124901412 Neighboring gene uncharacterized LOC105378025 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:140469533-140470033 Neighboring gene RNA, 5S ribosomal pseudogene 220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    140036269..140092995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744384.2 RNA Sequence

  2. XR_001744383.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    141219986..141276696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077183.1 RNA Sequence

  2. XR_007077182.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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