U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107986223 uncharacterized LOC107986223 [ Homo sapiens (human) ]

Gene ID: 107986223, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107986223
Gene description
uncharacterized LOC107986223
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107986223 in Genome Data Viewer
Location:
4p15.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (32437068..32560466, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (32412025..32535432, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723846 Neighboring gene long intergenic non-protein coding RNA 2353 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:32398011-32398729 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78431 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78443 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:32685598-32686457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:32749967-32750466 Neighboring gene MPRA-validated peak5018 silencer Neighboring gene uncharacterized LOC124900831 Neighboring gene NANOG hESC enhancer GRCh37_chr4:32911350-32911851 Neighboring gene MAPRE1 pseudogene 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    32437068..32560466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741503.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    32412025..32535432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075307.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases