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LOC107985255 uncharacterized LOC107985255 [ Homo sapiens (human) ]

Gene ID: 107985255, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985255
Gene description
uncharacterized LOC107985255
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985255 in Genome Data Viewer
Location:
1q32.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (208819455..209133248, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (208063755..208380069, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372892 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2240 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2254 Neighboring gene ribosomal protein S26 pseudogene 13 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2323 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2353 Neighboring gene long intergenic non-protein coding RNA 1717 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2464 Neighboring gene long intergenic non-protein coding RNA 1774 Neighboring gene uncharacterized LOC105372895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2465 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:209315048-209315576 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:209328847-209329366 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:209330558-209331095 Neighboring gene GRB2 related adaptor protein pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2466 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209372987-209373925 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:209375923-209376422 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2467 Neighboring gene uncharacterized LOC105372896 Neighboring gene TFDP1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    208819455..209133248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738442.2 RNA Sequence

  2. XR_001738441.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    208063755..208380069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071055.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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