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LOC107985179 uncharacterized LOC107985179 [ Homo sapiens (human) ]

Gene ID: 107985179, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985179
Gene description
uncharacterized LOC107985179
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985179 in Genome Data Viewer
Location:
18q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (71432085..71623999)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (71653671..71845645)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372188 Neighboring gene uncharacterized LOC105372187 Neighboring gene signal peptide peptidase like 3 pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49614 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49625 Neighboring gene NANOG hESC enhancer GRCh37_chr18:68970695-68971352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:68971933-68972632 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49782 Neighboring gene long intergenic non-protein coding RNA 1541 Neighboring gene uncharacterized LOC105372186 Neighboring gene long intergenic non-protein coding RNA 1899 Neighboring gene uncharacterized LOC105376873

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    71432085..71623999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753502.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    71653671..71845645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088495.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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