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LOC107985080 uncharacterized LOC107985080 [ Homo sapiens (human) ]

Gene ID: 107985080, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985080
Gene description
uncharacterized LOC107985080
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985080 in Genome Data Viewer
Location:
17p12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (14374111..14383815)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (14279523..14318561)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:14139403-14139910 Neighboring gene CMT1A duplicated region transcript 15 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:14206998-14207498 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8209 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:14213623-14214143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:14213102-14213622 Neighboring gene NANOG hESC enhancer GRCh37_chr17:14226810-14227361 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 3B1 Neighboring gene uncharacterized protein MGC12916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:14256381-14257207 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8210 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:14276639-14277838 Neighboring gene NANOG hESC enhancer GRCh37_chr17:14462906-14463439 Neighboring gene uncharacterized LOC107984996 Neighboring gene ribosomal protein S18 pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    14374111..14383815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007065630.1 RNA Sequence

  2. XR_007065629.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    14279523..14318561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087912.1 RNA Sequence

  2. XR_007087913.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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