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LOC107984788 uncharacterized LOC107984788 [ Homo sapiens (human) ]

Gene ID: 107984788, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984788
Gene description
uncharacterized LOC107984788
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984788 in Genome Data Viewer
Location:
15q23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (69751949..69786513)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (67571140..67608635)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903517 Neighboring gene downregulated RNA in cancer, inhibitor of cell invasion and migration Neighboring gene prostate cancer associated transcript 29 Neighboring gene Sharpr-MPRA regulatory region 11672 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:69938726-69939304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69957399-69958014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69958631-69959245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9662 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40793 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6601 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9663 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70086634-70087136 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:70090778-70091977 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:70097321-70097517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70106110-70106935 Neighboring gene gem nuclear organelle associated protein 8 pseudogene 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:70112963-70113484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70114007-70114528 Neighboring gene long intergenic non-protein coding RNA 593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    69751949..69786513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751592.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    67571140..67608635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085988.1 RNA Sequence

  2. XR_007085989.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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