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LOC107984543 uncharacterized LOC107984543 [ Homo sapiens (human) ]

Gene ID: 107984543, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984543
Gene description
uncharacterized LOC107984543
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984543 in Genome Data Viewer
Location:
12q21.33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (89712237..89817100)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (89694113..89798995)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene POC1 centriolar protein B Neighboring gene POC1B-GALNT4 readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4694 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4695 Neighboring gene POC1B antisense RNA 1 Neighboring gene ATPase plasma membrane Ca2+ transporting 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6710 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4696 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4698 Neighboring gene ATP2B1 antisense RNA 1 Neighboring gene RNA, 5S ribosomal pseudogene 365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4699 Neighboring gene RNA, U6 small nuclear 148, pseudogene Neighboring gene mitochondrial ribosomal protein L2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6711 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6713 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:90277501-90278426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:90313523-90314022 Neighboring gene uncharacterized LOC105369890 Neighboring gene bromodomain and WD repeat domain containing 1 pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 2399

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    89712237..89817100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063399.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    89694113..89798995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082914.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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